So a little update:
I went under my A2 yesterday for further investigation - still did not found any reasonable source for the rattle (when standing in front of the car with the bonnet out, or lying below the engine compartment the rattle is either impossible to distinguish from the engine noise or not there...).
Tried to press/hold/watch the fuel hose with the silencer on it - but this has no effect on the rattle (i.e. when the rattle is there, squeezing this hose does not effects it).
Definitely it is not sourced from the gearbox area...
The only suspicious thing I noticed it that the auxiliary belt tensioner pulley very very close to the metal timing belt cover element - I have to investigate is further ...